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All issues EPJ Nonlinear Biomed Phys, 4 1 (2016) 2 Article references

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Cited article:

Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development

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https://doi.org/10.1038/s41588-021-00816-z

Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data

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Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks

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Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell types

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https://doi.org/10.1186/s13072-019-0308-3

Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm

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IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (5) 1620 (2019)
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Boost-HiC: computational enhancement of long-range contacts in chromosomal contact maps

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Bioinformatics 35 (16) 2724 (2019)
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Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

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Physical Review Letters 121 (5) (2018)
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Multiscale dynamic visualization of signal transduction processes with detailing of target-genes activation in three-dimensional genome structure

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Structure of the human chromosome interaction network

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PLOS ONE 12 (11) e0188201 (2017)
https://doi.org/10.1371/journal.pone.0188201

Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle

Luciana Lazar‐Stefanita, Vittore F Scolari, Guillaume Mercy, Héloise Muller, Thomas M Guérin, Agnès Thierry, Julien Mozziconacci and Romain Koszul
The EMBO Journal 36 (18) 2684 (2017)
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Luciana Lazar-Stefanita, Vittore F. Scolari, Guillaume Mercy, Agnès Thierry, Héloise Muller, Julien Mozziconacci and Romain Koszul
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https://doi.org/10.1101/096826